Cowell, Lindsay G.: search on Z-Library

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1

Towards an ontological representation of resistance: The case of MRSA

Albert Goldfain, Barry Smith, Lindsay G. Cowell

Journal:

Journal of Biomedical Informatics

Year:

2011

Language:

english

File:

PDF, 222 KB

english, 2011

2

An improved ontological representation of dendritic cells as a paradigm for all cell types

Anna Maria Masci, Cecilia N Arighi, Alexander D Diehl, Anne E Lieberman, Chris Mungall, Richard H Scheuermann, Barry Smith, Lindsay G Cowell

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 725 KB

english, 2009

3

Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data

Rubelt, Florian, Busse, Christian E, Bukhari, Syed Ahmad Chan, Bürckert, Jean-Philippe, Mariotti-Ferrandiz, Encarnita, Cowell, Lindsay G, Watson, Corey T, Marthandan, Nishanth, Faison, William J, Hers

Journal:

Nature Immunology

Year:

2017

Language:

english

File:

PDF, 414 KB

english, 2017

4

Contrast agent increases doppler velocities and improves reproducibility of aortic valve area measurements in patients with aortic stenosis

Smith, Lindsay A, Cowell, S.Joanna, White, Audrey C, Boon, Nicholas A, Newby, David E, Northridge, David B

Journal:

Journal of the American Society of Echocardiography

Year:

2004

Language:

english

File:

PDF, 166 KB

english, 2004

5

Towards an Ontological Representation of Resistance: The Case of MRSa

Goldfain, Albert, Cowell, Lindsay, Smith, Barry

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 76 KB

2009

6

VO: Vaccine Ontology

He, Yongqun, Chen, Fang, Scheuermann, Richard, Todd, Thomas, Brinkman, Ryan, Colby, Lesley, Courtot, Melanie, Rush, Howard, Mungall, Chris, Whetzel, Trish, Musen, Mark, Athey, Brian, Cowell, Lindsay,

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 99 KB

2009

7

The “Dispensable” Portion of RAG2 Is Necessary for Efficient V-to-DJ Rearrangement during B and T Cell Development

Hong-Erh Liang, Lih-Yun Hsu, Dragana Cado, Lindsay G. Cowell, Garnett Kelsoe, Mark S. Schlissel

Journal:

Year:

2002

Language:

english

File:

PDF, 944 KB

english, 2002

8

Clonal Complexes in Biomedical Ontologies

Goldfain, Albert, Cowell, Lindsay, Smith, Barry

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 26 KB

2009

9

Catch and Bycatch: The Qualitative Effects of Fisheries on Population Vital Rates of Atlantic Croaker

Diamond, Sandra L., Crowder, Larry B., Cowell, Lindsay G.

Journal:

Transactions of the American Fisheries Society

Year:

1999

Language:

english

File:

PDF, 209 KB

english, 1999

10

Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis

Ostmeyer, Jared, Christley, Scott, Rounds, William H., Toby, Inimary, Greenberg, Benjamin M., Monson, Nancy L., Cowell, Lindsay G.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.64 MB

english, 2017

11

iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories

Corrie, Brian D., Marthandan, Nishanth, Zimonja, Bojan, Jaglale, Jerome, Zhou, Yang, Barr, Emily, Knoetze, Nicole, Breden, Frances M. W., Christley, Scott, Scott, Jamie K., Cowell, Lindsay G., Breden,

Journal:

Immunological Reviews

Year:

2018

Language:

english

File:

PDF, 941 KB

english, 2018

12

Machine learning on sequential data using a recurrent weighted average

Ostmeyer, Jared, Cowell, Lindsay

Journal:

Year:

2019

Language:

english

File:

PDF, 1.62 MB

english, 2019

13

Evaluation of the Cell Ontology (CL)

Cowell, Lindsay

Journal:

Nature Precedings

Year:

2009

File:

PDF, 104 KB

2009

14

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

Christley, Scott, Levin, Mikhail K., Toby, Inimary T., Fonner, John M., Monson, Nancy L., Rounds, William H., Rubelt, Florian, Scarborough, Walter, Scheuermann, Richard H., Cowell, Lindsay G.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 378 KB

english, 2017

15

Computational tools for understanding sequence variability in recombination signals

Lindsay G. Cowell, Marco Davila, Dale Ramsden, Garnett Kelsoe

Journal:

Immunological Reviews

Year:

2004

Language:

english

File:

PDF, 721 KB

english, 2004

16

Bonding and reactivity of styrene on Cu(110): heterogeneous alkene epoxidation without the use of silver

James J. Cowell, Ashok K. Santra, Robert Lindsay, Richard M. Lambert, Alessandro Baraldi, Andrea Goldoni

Journal:

Surface Science

Year:

1999

Language:

english

File:

PDF, 332 KB

english, 1999

17

iWAS – A novel approach to analyzing Next Generation Sequence data for immunology

Vincent, Benjamin, Buntzman, Adam, Hopson, Benjamin, McEwen, Chris, Cowell, Lindsay, Akoglu, Ali, Zhang, Helen, Frelinger, Jeffrey

Journal:

Cellular Immunology

Year:

2015

Language:

english

File:

PDF, 513 KB

english, 2015

18

owlcpp: a C++ library for working with OWL ontologies

Levin, Mikhail K., Cowell, Lindsay G.

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

19

Cell type discovery and representation in the era of high-content single cell phenotyping

Bakken, Trygve, Cowell, Lindsay, Aevermann, Brian D., Novotny, Mark, Hodge, Rebecca, Miller, Jeremy A., Lee, Alexandra, Chang, Ivan, McCorrison, Jamison, Pulendran, Bali, Qian, Yu, Schork, Nicholas J.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 2.88 MB

english, 2017

20

VO: Vaccine Ontology

He, Yongqun, Chen, Fang, Scheuermann, Richard, Todd, Thomas, Brinkman, Ryan, Colby, Lesley, Courtot, Melanie, Rush, Howard, Mungall, Chris, Whetzel, Trish, Musen, Mark, Athey, Brian, Cowell, Lindsay,

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 273 KB

2009

21

Identification and utilization of arbitrary correlations in models of recombination signal sequences

Lindsay G Cowell, Marco Davila, Thomas B Kepler, Garnett Kelsoe

Journal:

Year:

2002

Language:

english

File:

PDF, 1.93 MB

english, 2002

22

The Antibody Genetics of Multiple Sclerosis: Comparing Next-Generation Sequencing to Sanger Sequencing

Rounds, William H., Ligocki, Ann J., Levin, Mikhail K., Greenberg, Benjamin M., Bigwood, Douglas W., Eastman, Eric M., Cowell, Lindsay G., Monson, Nancy L.

Journal:

Frontiers in Neurology

Year:

2014

Language:

english

File:

PDF, 1.26 MB

english, 2014

23

NIH Public Access

Brentjens, Renier, Davila, Marco L, Riviere, Isabelle, Park, Jae, Cowell, Lindsay G, Bartido, Shirley, Stefanski, Jolanta, Taylor, Clare, Borquez-ojeda, Oriana, Qu, Jinrong, Wasielewska, Teresa, He, Q

Year:

2013

Language:

english

File:

PDF, 1.96 MB

english, 2013

24

The Diagnostic, Prognostic, and Therapeutic Potential of Adaptive Immune Receptor Repertoire Profiling in Cancer

Cowell, Lindsay G.

Journal:

Cancer Research

Year:

2020

File:

PDF, 470 KB

2020

25

Conserved cryptic recombination signals in Vκ gene segments are cleaved in small pre-B cells

Anne E Lieberman, Masayuki Kuraoka, Marco Davila, Garnett Kelsoe, Lindsay G Cowell

Journal:

Year:

2009

Language:

english

File:

PDF, 1000 KB

english, 2009

26

Biophysicochemical motifs in T cell receptor sequences as a potential biomarker for high-grade serous ovarian carcinoma

Ostmeyer, Jared, Lucas, Elena, Christley, Scott, Lea, Jayanthi, Monson, Nancy, Tiro, Jasmin, Cowell, Lindsay G., Chan, David Wai

Journal:

Year:

2020

File:

PDF, 1.48 MB

2020

27

RAG Represents a Widespread Threat to the Lymphocyte Genome

Teng, Grace, Maman, Yaakov, Resch, Wolfgang, Kim, Min, Yamane, Arito, Qian, Jason, Kieffer-Kwon, Kyong-Rim, Mandal, Malay, Ji, Yanhong, Meffre, Eric, Clark, Marcus R., Cowell, Lindsay G., Casellas, Ra

Journal:

Year:

2015

Language:

english

File:

PDF, 3.58 MB

english, 2015

28

Towards an Ontological Representation of Resistance: The Case of MRSa

Goldfain, Albert, Cowell, Lindsay, Smith, Barry

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 864 KB

english, 2009

29

Enhanced Evolvability in Immunoglobulin V Genes Under Somatic Hypermutation

Lindsay G. Cowell, Hye-Jung Kim, Tiina Humaljoki, Claudia Berek, Thomas B. Kepler

Journal:

Journal of Molecular Evolution

Year:

1999

Language:

english

File:

PDF, 31 KB

english, 1999

30

A Functional Analysis of the Spacer of V(D)J Recombination Signal Sequences

Lee, Alfred Ian, Fugmann, Sebastian D, Cowell, Lindsay G, Ptaszek, Leon M, Kelsoe, Garnett, Schatz, David G, Shizuo Akira,

Journal:

Year:

2003

Language:

english

File:

PDF, 519 KB

english, 2003

31

Hematopoietic cell types: Prototype for a revised cell ontology

Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik,

Journal:

Journal of Biomedical Informatics

Year:

2011

Language:

english

File:

PDF, 522 KB

english, 2011

32

Comparative Immunogenicity of 7 and 13-Valent Pneumococcal Conjugate Vaccines and the Development of Functional Antibodies to Cross-Reactive Serotypes

Grant, Lindsay R., O’Brien, Sarah E., Burbidge, Polly, Haston, Mitch, Zancolli, Marta, Cowell, Lucy, Johnson, Marina, Weatherholtz, Robert C., Reid, Raymond, Santosham, Mathuram, O’Brien, Katherine L.

Journal:

Year:

2013

Language:

english

File:

PDF, 286 KB

english, 2013

33

Mining adaptive immune receptor repertoires for biological and clinical information using machine learning

Greiff, Victor, Yaari, Gur, Cowell, Lindsay

Journal:

Current Opinion in Systems Biology

Year:

2020

File:

PDF, 1.41 MB

2020

34

Logical Development of the Cell Ontology

Terrence F Meehan, Anna Maria Masci, Amina Abdulla, Lindsay G Cowell, Judith A Blake, Christopher J Mungall, Alexander D Diehl

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 4.89 MB

english, 2011

35

Population effects of shrimp trawl bycatch on Atlantic croaker

Diamond, Sandra L, Cowell, Lindsay G, Crowder, Larry B

Journal:

Canadian Journal of Fisheries and Aquatic Sciences

Year:

2000

File:

PDF, 344 KB

2000

36

Ontology for Vector Surveillance and Management

Lozano-Fuentes, Saul, Bandyopadhyay, Aritra, Cowell, Lindsay G., Goldfain, Albert, Eisen, Lars

Journal:

Journal of Medical Entomology

Year:

2013

Language:

english

File:

PDF, 838 KB

english, 2013

37

VO: Vaccine Ontology

He, Yongqun, Chen, Fang, Scheuermann, Richard, Todd, Thomas, Brinkman, Ryan, Colby, Lesley, Courtot, Melanie, Rush, Howard, Mungall, Chris, Whetzel, Trish, Musen, Mark, Athey, Brian, Cowell, Lindsay,

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 99 KB

english, 2009

38

Towards an Ontological Representation of Resistance: The Case of MRSa

Goldfain, Albert, Cowell, Lindsay, Smith, Barry

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 76 KB

english, 2009

39

Density-dependent Prenatal Androgen Exposure as an Endogenous Mechanism for the Generation of Cycles in Small Mammal Populations

Lindsay G. Cowell, Larry B. Crowder, Thomas B. Kepler

Journal:

Journal of Theoretical Biology

Year:

1998

Language:

english

File:

PDF, 270 KB

english, 1998

40

The recombination difference between mouse κ and λ segments is mediated by a pair-wise regulation mechanism

Mani Larijani, Shuang Chen, Lesley A. Cunningham, Joseph M. Volpe, Lindsay Grey Cowell, Susanna M. Lewis, Gillian E. Wu

Journal:

Molecular Immunology

Year:

2006

Language:

english

File:

PDF, 435 KB

english, 2006

41

Clonal Complexes in Biomedical Ontologies

Goldfain, Albert, Cowell, Lindsay, Smith, Barry

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 26 KB

english, 2009

42

Evaluation of the Cell Ontology (CL)

Cowell, Lindsay

Journal:

Nature Precedings

Year:

2009

Language:

english

File:

PDF, 104 KB

english, 2009

43

Bloodâbased biomarkers of human papillomavirusâassociated cancers: A systematic review and metaâanalysis

Balachandra, Sanjana, Kusin, Samuel B., Lee, Rebecca, Blackwell, JamesâMichael, Tiro, Jasmin A., Cowell, Lindsay G., Chiang, ChengâMing, Wu, ShwuâYuan, Varma, Sanskriti, Rivera, Erika L., Mayo,

Journal:

Year:

2020

File:

PDF, 1.16 MB

2020

44

A genome-wide association study of variants associated with acquisition ofStaphylococcus aureusbacteremia in a healthcare setting

Nelson, Charlotte L, Pelak, Kimberly, Podgoreanu, Mihai V, Ahn, Sun, Scott, William K, Allen, Andrew S, Cowell, Lindsay G, Rude, Thomas H, Zhang, Yurong, Tong, Amy, Ruffin, Felicia, Sharma-Kuinkel, Ba

Journal:

BMC Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 202 KB

english, 2014

45

Two Genes on A/J Chromosome 18 Are Associated with Susceptibility to Staphylococcus aureus Infection by Combined Microarray and QTL Analyses

Ahn, Sun-Hee, Deshmukh, Hitesh, Johnson, Nicole, Cowell, Lindsay G., Rude, Thomas H., Scott, William K., Nelson, Charlotte L., Zaas, Aimee K., Marchuk, Douglas A., Keum, Sehoon, Lamlertthon, Supaporn,

Journal:

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

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